already emailed about this, but ill post it here too
1)
manual sorting ability in form of a "hold down to drag/move". Option to ignore alphabetical sorting and move/drag comics wherever you want like in YACLibrary Windows.
2)
Import your Libraries incl. folders and reading lists from YACReader Library (Windows) to YACReader (iOS app). So instead of the app working as "My Comics > individual comics/folders > etc > etc" you could instead have:
"Libraries > Example library > Folders & Reading lists that belong to this library". Just like in YACLibrary, the reading lists are simply copies of the comics in your folders. They don't take any additional space.
you could organize everything on Windows and import it all to your iPad
The first suggestion regarding manual sorting is more or less just as much a workaround solution for suggestion no.2 as it is an essential feature for any comic book app.
so if you feel like
suggestion 2) is not the point of YACReader iOS and not what it's about, please do consider the first suggestion about a "hold to touch/drag and move feature"
It provides the same features, it's just a bit more work for the user.